ms_mint

• ms_mint package
  • Submodules
  • ms_mint.Mint module
    • Mint
      • Mint._scale_group()
      • Mint.clear_ms_files()
      • Mint.clear_results()
      • Mint.clear_targets()
      • Mint.crosstab()
      • Mint.digest_results()
      • Mint.export()
      • Mint.get_chromatograms()
      • Mint.get_target_params()
      • Mint.load()
      • Mint.load_files()
      • Mint.load_metadata()
      • Mint.load_targets()
      • Mint.ms_files
      • Mint.n_files
      • Mint.peak_labels
      • Mint.progress
      • Mint.reset()
      • Mint.results
      • Mint.run()
      • Mint.save_metadata()
      • Mint.status
      • Mint.targets
      • Mint.version
  • ms_mint.Chromatogram module
    • Chromatogram
      • Chromatogram.__init__()
      • Chromatogram.apply_filters()
      • Chromatogram.data
      • Chromatogram.estimate_noise_level()
      • Chromatogram.find_peaks()
      • Chromatogram.from_file()
      • Chromatogram.optimise_peak_times_with_diff()
      • Chromatogram.plot()
      • Chromatogram.select_peak_by_highest_intensity()
      • Chromatogram.select_peak_by_rt()
      • Chromatogram.select_peak_with_gaussian_weight()
      • Chromatogram.selected_peaks
  • ms_mint.filelock module
    • BaseFileLock
      • BaseFileLock.__init__()
      • BaseFileLock._acquire()
      • BaseFileLock._release()
      • BaseFileLock.acquire()
      • BaseFileLock.is_locked
      • BaseFileLock.lock_file
      • BaseFileLock.release()
      • BaseFileLock.timeout
    • FileLock
    • SoftFileLock
    • Timeout
      • Timeout.__init__()
      • Timeout.lock_file
    • UnixFileLock
    • WindowsFileLock
  • ms_mint.filters module
    • Filter
      • Filter.transform()
    • GaussFilter
      • GaussFilter.__init__()
      • GaussFilter.transform()
    • Resampler
      • Resampler.__init__()
      • Resampler.transform()
    • Smoother
      • Smoother.__init__()
      • Smoother.transform()
  • ms_mint.io module
    • convert_ms_file_to_feather()
    • convert_ms_file_to_parquet()
    • df_to_numeric()
    • export_to_excel()
    • format_thermo_raw_file_reader_parquet()
    • ms_file_to_df()
    • mzml_to_df()
    • mzml_to_pandas_df_pyteomics()
    • mzmlb_to_df__pyteomics()
    • mzxml_to_df()
    • read_parquet()
    • set_dtypes()
  • ms_mint.matplotlib_tools module
    • hierarchical_clustering()
    • plot_metabolomics_hist2d()
    • plot_peak_shapes()
    • plot_peaks()
  • ms_mint.notebook module
    • Mint
      • Mint.display()
      • Mint.messages
  • ms_mint.pca module
    • PCA_Plotter
      • PCA_Plotter.__init__()
      • PCA_Plotter.cumulative_variance()
      • PCA_Plotter.cumulative_variance_px()
      • PCA_Plotter.cumulative_variance_sns()
      • PCA_Plotter.loadings()
      • PCA_Plotter.loadings_plotly()
      • PCA_Plotter.loadings_sns()
      • PCA_Plotter.pairplot()
      • PCA_Plotter.pairplot_plotly()
      • PCA_Plotter.pairplot_sns()
    • PrincipalComponentsAnalyser
      • PrincipalComponentsAnalyser.__init__()
      • PrincipalComponentsAnalyser.run()
  • ms_mint.plotly_tools module
    • get_palette_colors()
    • plotly_heatmap()
    • plotly_peak_shapes()
    • set_template()
  • ms_mint.plotting module
  • ms_mint.processing module
    • append_results()
    • extract_chromatogram_from_ms1()
    • extract_ms1_properties()
    • get_chromatogram_from_ms_file()
    • process_ms1()
    • process_ms1_file()
    • process_ms1_files_in_parallel()
    • process_ms1_from_numpy()
    • score_peaks()
    • slice_ms1_array()
  • ms_mint.standards module
  • ms_mint.targets module
    • check_targets()
    • convert_to_seconds()
    • diff_targets()
    • fill_missing_rt_values()
    • gen_target_grid()
    • read_targets()
    • standardize_targets()
  • ms_mint.tools module
    • df_diff()
    • find_peaks_in_timeseries()
    • fn_to_label()
    • formula_to_mass()
    • gaussian()
    • get_ms_files_from_results()
    • get_targets_from_results()
    • init_metadata()
    • is_ms_file()
    • lock()
    • log2p1()
    • mz_mean_width_to_min_max()
    • scale_dataframe()
  • Module contents